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What type of noise are you hearing? Is this a manual or auto trans?
Noise is through all gears it's a 5 speed manual
Does the noise change at all if the clutch pedal is pressed?
If it is present while driving and through all gears it is likely caused by a bad input shaft bearing. Are you planning on tearing the trans down to fix it or replace it?
Tearing down to replace bearing.noise stops when clutch is pressed