When did you obtain UK citizenship?
When did you obtain "permanent residence"?
When was your son born please?Tom
Just to clarify, you were born in the UK to UK parents, correct?
Thanks for your question. I will try to help.
If your son was born outside the UK before 1st July 2006 to you (a UK citizen) and an EEA mother but you and the mother were not married then he is entitled to UK citizenship but you must register him as such before you apply for his passport.The registration form used in these circumstances would be UKF and you will see that the following link contains both the guide to registration in such circumstances (so that you can confirm his eligibility for yourself) and the application form in order to apply for his certificate of registration:
Once you have obtained his certificate of registration then you can apply for his UK passport. He will be a UK citizen by descent, which means that he will have all the same rights that any other UK citizen has except that he would not automatically be able to pass on his own citizenship to his children if they are born outside the UK.
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