1. Dear *****, you are worrying unduly. Once you have got Indefinite Leave to remain, you can stay in the UK indefinitely. You cannot be thrown out, unless you committed some serious criminal offence. Certainly, just because you are in a Woman's shelter, you will most certainly NOT be thrown out of the UK. So, you are worrying unnecessarily. The next thing for you to consider is to get yourself in a position to apply for citizenship. After one year of ILR, you can apply for citizenship in the UK. So, this should be your aim. Once you get back working again, you should certainly consider an application for UK citizenship.
2. Secondly, you should immediately apply for a replacement residence permit for the one that got stolen. It makes no difference that this goes to the woman's refuge. The Home Office will not throw you out merely because you give an address of a woman's refuge. So, apply for this as soon as you can.
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