Hi there, thanks for the question.
sounds like you have alot going on here. Lets starts with the windows.
Will the windows not go up regardless of whether you use the master switch or the actual door switch pertaining to that window? does using a different switch make any difference at all?
no they will not go up regardless of what switch i use they some times go up with there individual and master switch as your driving along but they stop and start i think the jolting of the road helps them