Thanks for your question, I am Sam and I am one of the UK tax experts here on Just Answer.
The residence page asks the important questions such as
When did you leave the UK and how many days have been spent out of the UK, which allows HMRC to determine the residence status (and again to see this has continued through to after 05/04/2015 when the 2015 tax return is issued at the year end)
So on the paper version of the SA109 (residence.remittance) he just needs to fill in Question 3, 4,7 and 8,10,12, 13 and 14 (and the questions relate to the period when husband was overseas)
Then question 15 to claim personal allowances (which your husband remains entitled to) question 17 and 18 and 19
You do not fill in the domicile or remittance basis details, they apply to a individual who has come to the UK to live and has overseas income.
However as you employed an accountant to file your husbands tax return they should rectify their mistake free of charge, and I would be inclined to take this up with them - and if you get no joy, then write to the head partner of the firm of accountants. If they are a sole practitioner, then to the accountancy firm they are affiliated with (such as AAT or ACCA etc)
In theory if your husband proves to be treated as not resident (and therefore not liable to UK tax) then yes, he would be liable to tax in Jordan, and should establish his tax position there - perhaps the business that employ him can offer the advise on this, but I have added a link here regarding the personal income position in Jordan for your information.
Let me know if you have any follow up questions