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HI there, you are through to Dr. Jake. Im a UK based vet. im sorry to hear of your concerns with your dog. we often see dogs that have vestibular disease are wobbly and struggle to walk until they start to recover , this can often result in bumping in to things and leading to trauma of the head and eyes. i suspect this has occured to cause the rubbing.
with ocular conditions its important that the eye is examined by a vet prior to administration of any treatment as the eye needs to be examined to make sure an ulcer or scratch isnt present. this can change the choice of medication as some ocular medications can worsen an ulcer or scratch. i would recommend making an appointment with a local vet who can conduct a full opthalmic exam prior to prescribing ocular medications for your dog.
these topical ocular medications wont interfere with the canergy she is on at the moment
i hope all this information helps
no problem at all